2JRH
Solution structure of human MEKK3 PB1 domain cis isomer
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
2 | 3D CBCA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
3 | 3D C(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
4 | 3D HNCO | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
5 | 3D HBHA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
6 | 3D H(CCO)NH | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
7 | 3D HCCH-TOCSY | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
8 | 3D HCCH-COSY | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
9 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
10 | 3D 1H-13C NOESY | 0.5 mM [U-100% 13C; U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 | ||
11 | 2D 1H-15N HSQC | 0.8 mM [U-100% 15N] MEKK3 PB1-cis | 90% H2O/10% D2O | 6.0 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
2 | Bruker | DMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics | The structures are based on a total of 1296 restraints, 1156 are noe-derived distance constraints, 112 dihedral angle restraints,28 distance restraints from hydrogen bonds. | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | data analysis | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | processing | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
4 | structure solution | MOLMOL | Koradi, Billeter and Wuthrich | |
5 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
6 | processing | MOLMOL | Koradi, Billeter and Wuthrich | |
7 | structure solution | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
8 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
9 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
10 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |