2JPJ
Lactococcin G-a in DPC
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-15N] lcnGa, 200 mM [U-2H] DPC, 0.1 % TFA, 10 % D2O, 0.2 mM DSS | 90% H2O/10% D2O | 2.8 | ambient | 298 | ||
2 | 2D 1H-1H NOESY | 1 mM [U-15N] lcnGa, 200 mM [U-2H] DPC, 0.1 % TFA, 10 % D2O, 0.2 mM DSS | 90% H2O/10% D2O | 2.8 | ambient | 298 | ||
3 | 2D 1H-1H TOCSY | 1 mM [U-15N] lcnGa, 200 mM [U-2H] DPC, 0.1 % TFA, 10 % D2O, 0.2 mM DSS | 90% H2O/10% D2O | 2.8 | ambient | 298 | ||
4 | 3D 1H-15N NOESY | 1 mM [U-15N] lcnGa, 200 mM [U-2H] DPC, 0.1 % TFA, 10 % D2O, 0.2 mM DSS | 90% H2O/10% D2O | 2.8 | ambient | 298 | ||
5 | 3D 1H-15N TOCSY | 1 mM [U-15N] lcnGa, 200 mM [U-2H] DPC, 0.1 % TFA, 10 % D2O, 0.2 mM DSS | 90% H2O/10% D2O | 2.8 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 102 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | Varian | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | CARA | 1.4.1 | Keller and Wuthrich |
4 | data analysis | CARA | 1.4.1 | Keller and Wuthrich |
5 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
6 | torsion angle prediction | TALOS | Cornilescu, Delaglio and Bax | |
7 | structure visualization | MOLMOL | 2k.2 | Koradi, Billeter and Wuthrich |
8 | rmsd value calculation | MOLMOL | 2k.2 | Koradi, Billeter and Wuthrich |
9 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |