2JOW
Differences in the electrostatic surfaces of the type III secretion needle proteins
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 | |
2 | 3D HNCA | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 | |
3 | 3D HNCO | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 | |
4 | 3D CBCA(CO)NH | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 | |
5 | 3D HNCACB | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 | |
6 | 3D HBHA(CO)NH | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 | |
8 | 3D 1H-13C NOESY | 0.8 mM entity | 90% H2O/10% D2O | 70 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 7 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll |
2 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | data analysis | NMRView | Johnson, One Moon Scientific | |
5 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |