2JM3

Solution structure of the THAP domain from C. elegans C-terminal binding protein (CtBP)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
23D HNCA0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
33D HNCACB0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
43D HN(CO)CA0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
53D CBCA(CO)NH0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
63D HCCH-TOCSY0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS99% D2O0.126.9ambient298
73D HCCH-COSY0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS99% D2O0.126.9ambient298
83D 1H-15N NOESY0.45 mM [U-99% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
93D 1H-13C NOESY0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS99% D2O0.126.9ambient298
102D NOESY1 mM CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
11C(CO)NH-TOCSY0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
12H(CCO)NH-TOCSY0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
133D HNHA0.45 mM [U-99% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
143D HN(CA)CO0.6 mM [U-98% 13C, U-98% 15N] CtBP THAP domain, 20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 0.1 mM DSS, 93% H2O, 7% D2O93% H2O/7% D2O0.126.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAMX600
2BrukerAMX600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsARIA/CNS was used for structure calculation and refinementSparky
NMR Ensemble Information
Conformer Selection Criterialowest energy
Conformers Calculated Total Number500
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined using a combination of NOE and coupling constant data.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisSparkyT Goddard
2collectionXwinNMRBruker Biospin
3structure solutionARIAJ Linge, S O'Donoghue and M Nilges
4structure solutionTALOSG Cornilescu, F Delaglio and A Bax
5refinementCNS