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The Structure of F1-ATPase inhibited by piceatannol.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W0J PDB ENTRY 1W0J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 pH 8.2
Crystal Properties Matthews coefficient Solvent content 3.13 60.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.957 α = 90 b = 281.176 β = 89.58 c = 138.785 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 72.36 90.3 0.09 7.3 1.4 201334
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 92.5 0.35 1.9 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W0J 2.7 72.74 191086 10244 90 0.205 0.202 0.2069 0.269 RANDOM 36.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.88 0.26 1.65 2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.529 r_dihedral_angle_4_deg 18.369 r_dihedral_angle_3_deg 16.46 r_dihedral_angle_1_deg 5.686 r_scangle_it 5.253 r_scbond_it 3.58 r_mcangle_it 2.248 r_mcbond_it 1.267 r_angle_refined_deg 1.263 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.529 r_dihedral_angle_4_deg 18.369 r_dihedral_angle_3_deg 16.46 r_dihedral_angle_1_deg 5.686 r_scangle_it 5.253 r_scbond_it 3.58 r_mcangle_it 2.248 r_mcbond_it 1.267 r_angle_refined_deg 1.263 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.241 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 46072 Nucleic Acid Atoms Solvent Atoms 1139 Heterogen Atoms 436
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing