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CRYSTAL STRUCTURE OF RHOGDI E155H, E157H MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BXW PDB ENTRY 2BXW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.4 M SODIUM CITRATE 0.1 M HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 4.42 72.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.124 α = 90 b = 130.124 β = 90 c = 162.885 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 99.7 0.07 39 10.3 69501
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 96.5 0.8 1.42 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BXW 1.6 92.85 68064 1401 99.5 0.195 0.194 0.219 RANDOM 15.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.12 -0.25 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.731 r_dihedral_angle_4_deg 13.657 r_dihedral_angle_3_deg 12.813 r_dihedral_angle_1_deg 5.911 r_scangle_it 3.211 r_scbond_it 2.45 r_angle_refined_deg 2.211 r_angle_other_deg 1.503 r_mcangle_it 1.267 r_mcbond_it 1.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.731 r_dihedral_angle_4_deg 13.657 r_dihedral_angle_3_deg 12.813 r_dihedral_angle_1_deg 5.911 r_scangle_it 3.211 r_scbond_it 2.45 r_angle_refined_deg 2.211 r_angle_other_deg 1.503 r_mcangle_it 1.267 r_mcbond_it 1.071 r_symmetry_vdw_other 0.27 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.211 r_nbd_other 0.18 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.096 r_nbtor_other 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2224 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing