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Structure of the TycC5-6 PCP-C bidomain of the tyrocidine synthetase TycC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 7.5 MG PROTEIN/ML MIXED 1:1 WITH A RESERVOIR SOLUTION CONTAINING 1.6 M AMMONIUM SULFATE, 0.04 M MES (PH 6.5) AND 4% DIOXANE
Crystal Properties Matthews coefficient Solvent content 2.38 42.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.973 α = 90 b = 84.973 β = 90 c = 164.969 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR MIRRORS 2006-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 20 98.9 0.04 20.9 5.05 51834 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 100 0.58 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.85 19.81 49809 1766 98.6 0.209 0.208 0.2138 0.238 0.2443 RANDOM 49.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.63 -1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_4_deg 14.2 r_dihedral_angle_3_deg 13.501 r_dihedral_angle_1_deg 5.309 r_scangle_it 1.744 r_scbond_it 1.065 r_angle_refined_deg 0.963 r_mcangle_it 0.869 r_angle_other_deg 0.791 r_mcbond_it 0.461
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.045 r_dihedral_angle_4_deg 14.2 r_dihedral_angle_3_deg 13.501 r_dihedral_angle_1_deg 5.309 r_scangle_it 1.744 r_scbond_it 1.065 r_angle_refined_deg 0.963 r_mcangle_it 0.869 r_angle_other_deg 0.791 r_mcbond_it 0.461 r_symmetry_vdw_other 0.203 r_nbd_refined 0.202 r_nbd_other 0.183 r_symmetry_vdw_refined 0.183 r_nbtor_refined 0.176 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.117 r_nbtor_other 0.083 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4149 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 23
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX phasing SHARP phasing REFMAC refinement