☰ Navigation Tabs
ESTROGEN RECEPTOR ALPHA LBD IN COMPLEX WITH AN AFFINITY-SELECTED COREPRESSOR PEPTIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BJ4 PDB ENTRY 2BJ4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 0.35M AMMONIUM SULPHATE, 0.7M LITHIUM SULPHATE, 0.07M TRI-SODIUM CITRATE PH5.6, pH 5.60
Crystal Properties Matthews coefficient Solvent content 4.6 73.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.573 α = 90 b = 126.573 β = 90 c = 113.429 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 30 99.9 0.06 13.4 5.4 34500 -3 59.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 100 0.46 2 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BJ4 2.55 30 32733 1735 99.9 0.194 0.193 0.1937 0.213 0.2144 RANDOM 42.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.73 1.36 2.73 -4.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.706 r_dihedral_angle_4_deg 20.921 r_dihedral_angle_3_deg 15.092 r_dihedral_angle_1_deg 5.214 r_scangle_it 3.264 r_scbond_it 2.094 r_angle_other_deg 1.867 r_angle_refined_deg 1.561 r_mcangle_it 1.222 r_mcbond_it 0.714
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.706 r_dihedral_angle_4_deg 20.921 r_dihedral_angle_3_deg 15.092 r_dihedral_angle_1_deg 5.214 r_scangle_it 3.264 r_scbond_it 2.094 r_angle_other_deg 1.867 r_angle_refined_deg 1.561 r_mcangle_it 1.222 r_mcbond_it 0.714 r_symmetry_hbond_refined 0.337 r_nbd_refined 0.24 r_symmetry_vdw_other 0.223 r_nbtor_refined 0.191 r_nbd_other 0.186 r_symmetry_vdw_refined 0.173 r_xyhbond_nbd_refined 0.13 r_nbtor_other 0.09 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3695 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing