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Crystal Structure of pp32
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other HOMOLOGY MODEL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 pH 5.50
Crystal Properties Matthews coefficient Solvent content 3.03 59.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.501 α = 90 b = 183.237 β = 104.39 c = 67.477 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD BENT CONICAL SI-MIRROR (RH COATED) 2006-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 25 98.6 0.11 9.8 3.6 48207 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 93.7 0.42 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT HOMOLOGY MODEL 2.4 25 45760 2426 98.3 0.221 0.218 0.2138 0.269 0.2596 RANDOM 10.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.15 1.42 -2.19 4.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.663 r_dihedral_angle_3_deg 20.487 r_dihedral_angle_4_deg 19.556 r_dihedral_angle_1_deg 7.109 r_scangle_it 2.398 r_angle_refined_deg 1.505 r_scbond_it 1.478 r_mcangle_it 0.655 r_mcbond_it 0.368 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.663 r_dihedral_angle_3_deg 20.487 r_dihedral_angle_4_deg 19.556 r_dihedral_angle_1_deg 7.109 r_scangle_it 2.398 r_angle_refined_deg 1.505 r_scbond_it 1.478 r_mcangle_it 0.655 r_mcbond_it 0.368 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.206 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.102 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7134 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing