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The crystal structure of BAK1 - a mitochondrial apoptosis regulator
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 22% PEG3350, 20% GLYCEROL, 0.2M SODIUM SULPHATE, 2MM TCEP, 0.3M NACL, 20 MM HEPES PH7.5, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.04 39.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.77 α = 90 b = 62.77 β = 90 c = 138.07 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.7 0.05 38 20.17 313450
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 2 100 0.44 8.1 20.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.8 19.69 14832 785 99.9 0.189 0.187 0.1975 0.232 0.2475 RANDOM 24.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.14 0.28 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.478 r_dihedral_angle_3_deg 15.563 r_dihedral_angle_4_deg 12.117 r_dihedral_angle_1_deg 7.42 r_scangle_it 3.412 r_scbond_it 2.554 r_mcangle_it 1.858 r_mcbond_it 1.579 r_angle_refined_deg 1.426 r_angle_other_deg 0.915
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.478 r_dihedral_angle_3_deg 15.563 r_dihedral_angle_4_deg 12.117 r_dihedral_angle_1_deg 7.42 r_scangle_it 3.412 r_scbond_it 2.554 r_mcangle_it 1.858 r_mcbond_it 1.579 r_angle_refined_deg 1.426 r_angle_other_deg 0.915 r_symmetry_vdw_refined 0.342 r_symmetry_vdw_other 0.248 r_nbd_refined 0.236 r_symmetry_hbond_refined 0.202 r_nbtor_refined 0.192 r_xyhbond_nbd_refined 0.188 r_nbd_other 0.177 r_chiral_restr 0.103 r_nbtor_other 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1264 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SOLVE phasing