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membrane-bound glutamate carboxypeptidase II (GCPII) in complex with 2-PMPA (2-phosphonoMethyl-pentanedioic acid)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20 MM HEPES PH 7.25, 200 MM NACL, 5% (W/V) PEG 400 AND 15% (W/V) PEG 1500.
Crystal Properties Matthews coefficient Solvent content 3.18 61.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.755 α = 90 b = 130.982 β = 90 c = 159.611 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 35 95.9 0.09 13.1 5.2 52532
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.19 101.02 51166 1344 96.1 0.193 0.192 0.238 0.2664 RANDOM 43.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.88 -2.88 2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.553 r_dihedral_angle_3_deg 16.416 r_dihedral_angle_4_deg 15.767 r_dihedral_angle_1_deg 7.318 r_scangle_it 4.211 r_scbond_it 2.967 r_angle_refined_deg 2.077 r_mcangle_it 1.946 r_mcbond_it 1.185 r_nbtor_refined 0.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.553 r_dihedral_angle_3_deg 16.416 r_dihedral_angle_4_deg 15.767 r_dihedral_angle_1_deg 7.318 r_scangle_it 4.211 r_scbond_it 2.967 r_angle_refined_deg 2.077 r_mcangle_it 1.946 r_mcbond_it 1.185 r_nbtor_refined 0.331 r_symmetry_hbond_refined 0.307 r_symmetry_vdw_refined 0.294 r_nbd_refined 0.257 r_xyhbond_nbd_refined 0.212 r_chiral_restr 0.145 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5318 Nucleic Acid Atoms Solvent Atoms 402 Heterogen Atoms 194
Software Software Software Name Purpose REFMAC refinement HKL data reduction SCALEPACK data scaling