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Crystal structure of human calmodulin-dependent protein kinase I G
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A06 PDB ENTRY 1A06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.20M NA(MALONATE), 0.1M BTPROP PH 7.5, 20.0% PEG 3350, 10.0% ETGLY
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.666 α = 65.45 b = 53.736 β = 71.91 c = 64.177 γ = 73.84
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2006-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 33.36 98.9 0.05 12.82 2.79 64017 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 93 0.28 2.97 2.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1A06 1.7 56.89 62408 1609 98.9 0.157 0.155 0.1634 0.231 0.2364 RANDOM 19.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 -0.81 0.32 -0.05 0.11 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.943 r_dihedral_angle_4_deg 16.943 r_dihedral_angle_3_deg 12.321 r_scangle_it 9.727 r_scbond_it 8.362 r_mcangle_it 7.112 r_mcbond_it 6.226 r_dihedral_angle_1_deg 6.109 r_angle_refined_deg 1.364 r_angle_other_deg 0.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.943 r_dihedral_angle_4_deg 16.943 r_dihedral_angle_3_deg 12.321 r_scangle_it 9.727 r_scbond_it 8.362 r_mcangle_it 7.112 r_mcbond_it 6.226 r_dihedral_angle_1_deg 6.109 r_angle_refined_deg 1.364 r_angle_other_deg 0.899 r_symmetry_vdw_other 0.247 r_symmetry_hbond_refined 0.21 r_nbd_refined 0.206 r_nbd_other 0.182 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.139 r_nbtor_other 0.087 r_chiral_restr 0.084 r_symmetry_vdw_refined 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4513 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing