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Crystal structure of Human STE20-like kinase bound to 5-Amino-3-((4-(aminosulfonyl)phenyl)amino) -N-(2,6-difluorophenyl)-1H-1,2,4-triazole- 1-carbothioamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U5R PDB ENTRY 1U5R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 16% PEG3350, 0.15M KSCN, 10% ETG, 0.1M BTP PH6.5, pH 6.50
Crystal Properties Matthews coefficient Solvent content 3.53 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.195 α = 90 b = 101.195 β = 90 c = 177.173 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-08-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 62.26 100 0.08 16 8.9 32094 40
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.81 2.7 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1U5R 2.1 60 30437 1589 100 0.202 0.201 0.2005 0.233 0.2273 RANDOM 41.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.02 -0.03 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.415 r_dihedral_angle_4_deg 23.391 r_dihedral_angle_3_deg 12.663 r_dihedral_angle_1_deg 5.986 r_scangle_it 2.795 r_scbond_it 1.732 r_angle_refined_deg 1.54 r_mcangle_it 1.146 r_angle_other_deg 1.095 r_mcbond_it 0.625
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.415 r_dihedral_angle_4_deg 23.391 r_dihedral_angle_3_deg 12.663 r_dihedral_angle_1_deg 5.986 r_scangle_it 2.795 r_scbond_it 1.732 r_angle_refined_deg 1.54 r_mcangle_it 1.146 r_angle_other_deg 1.095 r_mcbond_it 0.625 r_symmetry_vdw_other 0.317 r_nbd_refined 0.205 r_nbd_other 0.188 r_symmetry_vdw_refined 0.181 r_nbtor_refined 0.17 r_mcbond_other 0.14 r_xyhbond_nbd_refined 0.134 r_symmetry_hbond_refined 0.123 r_nbtor_other 0.087 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2250 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing