X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.225% PEG 3350, 0.1M SODIUM CACODYLATE, 300MM AMMONIUM ACETATE, pH 7.20
Crystal Properties
Matthews coefficientSolvent content
2.7454.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.062α = 90
b = 105.061β = 98.26
c = 240.484γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU IMAGE PLATE2004-05-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.83090.70.086.51.839483
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.981.90.2531.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.7929.8137504197993.60.1820.1790.255RANDOM38.65
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.881
r_dihedral_angle_3_deg17.795
r_dihedral_angle_4_deg16.523
r_dihedral_angle_1_deg5.322
r_scangle_it1.556
r_angle_refined_deg1.307
r_scbond_it0.963
r_mcangle_it0.718
r_mcbond_it0.507
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.881
r_dihedral_angle_3_deg17.795
r_dihedral_angle_4_deg16.523
r_dihedral_angle_1_deg5.322
r_scangle_it1.556
r_angle_refined_deg1.307
r_scbond_it0.963
r_mcangle_it0.718
r_mcbond_it0.507
r_nbtor_refined0.307
r_nbd_refined0.219
r_xyhbond_nbd_refined0.193
r_symmetry_vdw_refined0.181
r_symmetry_hbond_refined0.1
r_chiral_restr0.09
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11015
Nucleic Acid Atoms
Solvent Atoms424
Heterogen Atoms116

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing