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The crystal structure of macrolide glycosyltransferases: A blueprint for antibiotic engineering
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25-26% PEG2KMME, 0.8M NAFORMATE, 0.1M NAACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.15 42.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.338 α = 90 b = 103.471 β = 94.82 c = 74.59 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD 2005-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 51.71 96.1 0.08 13.7 4.2 81807 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 80.1 0.26 4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 74.54 77514 4084 95.8 0.168 0.167 0.1665 0.198 0.1977 RANDOM 14.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.06 0.51 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.11 r_dihedral_angle_4_deg 17.66 r_dihedral_angle_3_deg 12.096 r_dihedral_angle_1_deg 5.216 r_scangle_it 3.418 r_scbond_it 2.174 r_angle_refined_deg 1.34 r_mcangle_it 1.34 r_mcbond_it 0.851 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.11 r_dihedral_angle_4_deg 17.66 r_dihedral_angle_3_deg 12.096 r_dihedral_angle_1_deg 5.216 r_scangle_it 3.418 r_scbond_it 2.174 r_angle_refined_deg 1.34 r_mcangle_it 1.34 r_mcbond_it 0.851 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.206 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.19 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5860 Nucleic Acid Atoms Solvent Atoms 642 Heterogen Atoms 146
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing