Solution structure of the apical stem-loop of the human hepatitis B virus encapsidation signal
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | NOESY | D2O AND 10% D2O/90% H2O | 100 | 7.0 | 1.0 atm | 298.0 | ||
| 2 | COSY | D2O AND 10% D2O/90% H2O | 100 | 7.0 | 1.0 atm | 298.0 | ||
| 3 | TOCSY | D2O AND 10% D2O/90% H2O | 100 | 7.0 | 1.0 atm | 298.0 | ||
| 4 | HSQC | D2O AND 10% D2O/90% H2O | 100 | 7.0 | 1.0 atm | 298.0 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. THIS STRUCTURE REPRESENTS THE PSEUDO TRILOOP OF THE APICAL STEM-LOOP FROM HEPATITIS B VIRUS EPSILON. RESTRAINTS WERE DERIVED FROM 27 NT SAMPLE OF THE WHOLE APICAL STEM-LOOP. | Amber |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 12 |
| Additional NMR Experimental Information | |
|---|---|
| Details | NONE |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | CASE ET AL. | |
| 2 | structure solution | Amber | ||
