2IXL

RmlC S. suis with dTDP-rhamnose


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.1643.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.408α = 90
b = 141.526β = 92.57
c = 53.586γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.643990.076.64.999569
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.7950.252.84

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.642.6894560497399.10.1690.1670.212RANDOM17.17
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.020.11-0.060.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.575
r_dihedral_angle_4_deg18.563
r_dihedral_angle_3_deg12.608
r_dihedral_angle_1_deg6.248
r_sphericity_free2.919
r_scangle_it2.524
r_scbond_it1.82
r_sphericity_bonded1.511
r_angle_refined_deg1.3
r_rigid_bond_restr1.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.575
r_dihedral_angle_4_deg18.563
r_dihedral_angle_3_deg12.608
r_dihedral_angle_1_deg6.248
r_sphericity_free2.919
r_scangle_it2.524
r_scbond_it1.82
r_sphericity_bonded1.511
r_angle_refined_deg1.3
r_rigid_bond_restr1.24
r_mcangle_it1.222
r_mcbond_it0.856
r_symmetry_metal_ion_refined0.726
r_nbtor_refined0.304
r_nbd_refined0.207
r_symmetry_vdw_refined0.196
r_symmetry_hbond_refined0.127
r_xyhbond_nbd_refined0.126
r_chiral_restr0.098
r_bond_refined_d0.012
r_metal_ion_refined0.006
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6337
Nucleic Acid Atoms
Solvent Atoms1475
Heterogen Atoms142

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling