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Structure of the monomeric outer membrane porin OmpG in the open and closed conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.9 100 MM HEPES PH 7.5 30% PEG 4000 200 MM CACL2
Crystal Properties Matthews coefficient Solvent content 3.7 66.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.6 α = 79.3 b = 77 β = 73.4 c = 103.9 γ = 74.3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 15 90.6 0.1 7.56 2.98 240777 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.3 14.98 79984 4210 100 0.226 0.224 0.269 RANDOM 56.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.98 -1.84 6.91 -1.36 -1.79 -3.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.005 r_dihedral_angle_4_deg 23.706 r_dihedral_angle_3_deg 21.491 r_dihedral_angle_1_deg 11.575 r_scangle_it 5.962 r_mcangle_it 4.651 r_scbond_it 4.358 r_mcbond_it 3.194 r_angle_refined_deg 2.504 r_nbtor_refined 0.341
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.005 r_dihedral_angle_4_deg 23.706 r_dihedral_angle_3_deg 21.491 r_dihedral_angle_1_deg 11.575 r_scangle_it 5.962 r_mcangle_it 4.651 r_scbond_it 4.358 r_mcbond_it 3.194 r_angle_refined_deg 2.504 r_nbtor_refined 0.341 r_symmetry_hbond_refined 0.318 r_symmetry_vdw_refined 0.249 r_nbd_refined 0.245 r_xyhbond_nbd_refined 0.226 r_chiral_restr 0.182 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9192 Nucleic Acid Atoms Solvent Atoms 460 Heterogen Atoms 2476
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling