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Structure of the PX Domain of Phosphoinositide 3-Kinase-C2alpha
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 1.7 M LI2SO4, 0.05 M MES PH 5.6
Crystal Properties Matthews coefficient Solvent content 2.05 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.933 α = 90 b = 115.933 β = 90 c = 115.933 γ = 90
Symmetry Space Group P 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH TORROIDAL MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 67 100 0.09 45.1 41 357186 67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.48 1.4 42.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIR THROUGHOUT 2.6 67 8709 874 100 0.252 0.247 0.2414 0.29 0.2772 RANDOM 51.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.056 r_dihedral_angle_3_deg 20.235 r_dihedral_angle_4_deg 17.39 r_dihedral_angle_1_deg 7.227 r_scangle_it 3.028 r_scbond_it 2.015 r_angle_refined_deg 1.654 r_mcangle_it 1.127 r_mcbond_it 0.644 r_nbtor_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.056 r_dihedral_angle_3_deg 20.235 r_dihedral_angle_4_deg 17.39 r_dihedral_angle_1_deg 7.227 r_scangle_it 3.028 r_scbond_it 2.015 r_angle_refined_deg 1.654 r_mcangle_it 1.127 r_mcbond_it 0.644 r_nbtor_refined 0.328 r_symmetry_vdw_refined 0.276 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.1 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1016 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling TRUNCATE data scaling autoSHARP phasing