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Reinterpretation of reduced form of formate dehydrogenase H from E. coli
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AA6 PDB ENTRY 1AA6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SEE 1AA6
Crystal Properties Matthews coefficient Solvent content 2.77 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.4 α = 90 b = 146.4 β = 90 c = 81.27 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AA6 2.27 34.5 34111 1645 88.5 0.178 0.175 0.226 RANDOM 22.57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.5 -1.5 3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.633 r_dihedral_angle_4_deg 20.186 r_dihedral_angle_3_deg 17.25 r_dihedral_angle_1_deg 7.364 r_scangle_it 2.163 r_angle_refined_deg 1.482 r_scbond_it 1.47 r_mcangle_it 0.971 r_angle_other_deg 0.895 r_mcbond_it 0.765
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.633 r_dihedral_angle_4_deg 20.186 r_dihedral_angle_3_deg 17.25 r_dihedral_angle_1_deg 7.364 r_scangle_it 2.163 r_angle_refined_deg 1.482 r_scbond_it 1.47 r_mcangle_it 0.971 r_angle_other_deg 0.895 r_mcbond_it 0.765 r_symmetry_vdw_other 0.237 r_symmetry_vdw_refined 0.209 r_nbd_other 0.202 r_nbd_refined 0.191 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.137 r_nbtor_other 0.089 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5444 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement