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Crystal structure of human Fanconi Anemia protein E C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 0.085M TrisCl, 0.170M Sodium Acetate, 25.5% PEG 4000, 15% glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.13 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.291 α = 90 b = 59.291 β = 90 c = 140.249 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-05-17 M MAD 2 1 x-ray 100 CCD ADSC QUANTUM 210 2006-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9794, 0.9798, 0.9764 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.9794 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 18.75 98.9 0.05 8.1 8.6 17665 17665 27.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 98.7 0.195 8.9 2470
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 18.75 16512 888 98.5 0.19648 0.19409 0.24356 0.2511 RANDOM 32.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.763 r_dihedral_angle_4_deg 13.612 r_dihedral_angle_3_deg 11.563 r_scangle_it 4.958 r_dihedral_angle_1_deg 3.448 r_scbond_it 3.289 r_mcangle_it 2.111 r_angle_refined_deg 1.776 r_mcbond_it 1.355 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.763 r_dihedral_angle_4_deg 13.612 r_dihedral_angle_3_deg 11.563 r_scangle_it 4.958 r_dihedral_angle_1_deg 3.448 r_scbond_it 3.289 r_mcangle_it 2.111 r_angle_refined_deg 1.776 r_mcbond_it 1.355 r_nbtor_refined 0.301 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.203 r_symmetry_vdw_refined 0.196 r_symmetry_hbond_refined 0.149 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1922 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling SHARP phasing