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Crystal structure of the heterodimeric complex of human RGS10 and activated Gi alpha 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AGR Swissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1 experimental model PDB 1EZT Swissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1 experimental model PDB 1EZY Swissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1 experimental model PDB 2BV1 Swissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.2M (NH4)2SO4, 0.1M Bis-Tris, pH 5.5, 25% PEG3350 , VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.33 63.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.628 α = 90 b = 100.628 β = 90 c = 145.359 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97925 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 97.2 20815 20470
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 80.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Swissmodel based on the coordinates of PDB entries 1agr, 1ezt, 1ezy, 2bv1 2.71 47.6 19430 19430 1040 97.42 0.20913 0.20913 0.20763 0.2072 0.23632 0.2342 RANDOM 48.111
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.07 2.07 -4.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.469 r_dihedral_angle_4_deg 21.765 r_dihedral_angle_3_deg 15.248 r_dihedral_angle_1_deg 5.349 r_scangle_it 1.47 r_angle_refined_deg 1.057 r_scbond_it 0.895 r_angle_other_deg 0.806 r_mcangle_it 0.702 r_mcbond_it 0.386
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.469 r_dihedral_angle_4_deg 21.765 r_dihedral_angle_3_deg 15.248 r_dihedral_angle_1_deg 5.349 r_scangle_it 1.47 r_angle_refined_deg 1.057 r_scbond_it 0.895 r_angle_other_deg 0.806 r_mcangle_it 0.702 r_mcbond_it 0.386 r_nbd_refined 0.213 r_nbtor_refined 0.186 r_symmetry_vdw_other 0.178 r_nbd_other 0.173 r_xyhbond_nbd_refined 0.141 r_metal_ion_refined 0.102 r_nbtor_other 0.083 r_symmetry_vdw_refined 0.056 r_chiral_restr 0.055 r_mcbond_other 0.053 r_symmetry_hbond_refined 0.027 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3399 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing