X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.22930.1M Tris7.2, 0.2M CaCl2, 30%PEG400, VAPOR DIFFUSION, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.652

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.069α = 90
b = 85.617β = 90
c = 126.341γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-3mirrors2006-06-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97904APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75099.60.0790.05931.57.74884048644-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7696.90.4320.3993.86.74651

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.7504613746137245499.230.166070.166070.164370.19876RANDOM12.188
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.731.52-0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.199
r_dihedral_angle_4_deg18.733
r_dihedral_angle_3_deg12.325
r_dihedral_angle_1_deg4.824
r_scangle_it3.845
r_scbond_it2.538
r_angle_refined_deg1.506
r_mcangle_it1.348
r_mcbond_it0.926
r_symmetry_vdw_refined0.359
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.199
r_dihedral_angle_4_deg18.733
r_dihedral_angle_3_deg12.325
r_dihedral_angle_1_deg4.824
r_scangle_it3.845
r_scbond_it2.538
r_angle_refined_deg1.506
r_mcangle_it1.348
r_mcbond_it0.926
r_symmetry_vdw_refined0.359
r_nbtor_refined0.306
r_nbd_refined0.214
r_symmetry_hbond_refined0.211
r_metal_ion_refined0.189
r_xyhbond_nbd_refined0.179
r_symmetry_metal_ion_refined0.156
r_chiral_restr0.101
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2816
Nucleic Acid Atoms
Solvent Atoms481
Heterogen Atoms11

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
HKL-3000phasing
SHELXDphasing
SHELXEmodel building
MLPHAREphasing
DMphasing
Omodel building
SOLVEphasing
RESOLVEphasing
ARP/wARPmodel building
CCP4phasing
Cootmodel building