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Extracellular Domain of CRIg
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A74
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.4 298 pH 6.4, EVAPORATION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.761057 30.1556
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.257 α = 90 b = 50.757 β = 90 c = 61.965 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50 91.5 0.031 18.7 3.6 39631 36270
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.14 50.1 0.219 1.8 1949
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.2 39.25 30901 30315 1511 99.06 0.135 0.135 0.134 0.1501 0.172 0.1839 RANDOM 9.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 -0.69 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.312 r_dihedral_angle_4_deg 20.455 r_dihedral_angle_3_deg 13.005 r_sphericity_free 10.239 r_dihedral_angle_1_deg 6.412 r_scangle_it 5.69 r_scbond_it 4.048 r_sphericity_bonded 4.044 r_mcangle_it 4.036 r_mcbond_it 3.407
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.312 r_dihedral_angle_4_deg 20.455 r_dihedral_angle_3_deg 13.005 r_sphericity_free 10.239 r_dihedral_angle_1_deg 6.412 r_scangle_it 5.69 r_scbond_it 4.048 r_sphericity_bonded 4.044 r_mcangle_it 4.036 r_mcbond_it 3.407 r_rigid_bond_restr 2.165 r_angle_refined_deg 1.49 r_mcbond_other 1.391 r_angle_other_deg 0.832 r_nbd_refined 0.236 r_symmetry_vdw_other 0.235 r_nbd_other 0.196 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.167 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.098 r_nbtor_other 0.083 r_symmetry_vdw_refined 0.065 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 950 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction AMoRE phasing