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Crystal structure of protein BH3703 from Bacillus halodurans, Pfam DUF600
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 2.0 M (NH4)2SO4, Tris, 0.2 M LiSO4, 10% Ethylene Glycol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.04 59.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.385 α = 90 b = 81.448 β = 90 c = 91.135 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.9793 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 60.75 99.7 0.042 0.032 13.2 7.8 71141 71141
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.66 100 0.695 0.54 2.84 7.7 7049
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.59 60.75 71059 71059 3592 99.23 0.173 0.173 0.172 0.1724 0.192 0.192 RANDOM 33.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -1.24 1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.687 r_dihedral_angle_3_deg 13.628 r_dihedral_angle_4_deg 8.646 r_dihedral_angle_1_deg 7.14 r_scangle_it 4.019 r_scbond_it 2.76 r_mcangle_it 1.708 r_angle_refined_deg 1.569 r_mcbond_it 1.124 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.687 r_dihedral_angle_3_deg 13.628 r_dihedral_angle_4_deg 8.646 r_dihedral_angle_1_deg 7.14 r_scangle_it 4.019 r_scbond_it 2.76 r_mcangle_it 1.708 r_angle_refined_deg 1.569 r_mcbond_it 1.124 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.221 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.199 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.124 r_bond_refined_d 0.019 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2942 Nucleic Acid Atoms Solvent Atoms 439 Heterogen Atoms 17
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction SHELXD phasing SHELXE model building