2I8A

Salmonella typhimurium liganded by phosphate ion at 1.64A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP297VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties
Matthews coefficientSolvent content
2.3347.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 89.6α = 90
b = 125.03β = 90
c = 134.95γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mmmirrors2005-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X130.8EMBL/DESY, HAMBURGX13

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6427241458241458
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.641.682

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6427167938883795.440.198830.196860.2366RANDOM15.702
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.330.11-0.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.835
r_dihedral_angle_4_deg17.181
r_dihedral_angle_3_deg13.986
r_dihedral_angle_1_deg5.516
r_sphericity_free3.909
r_scangle_it2.388
r_sphericity_bonded2.249
r_scbond_it1.602
r_angle_refined_deg1.233
r_mcangle_it1.192
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.835
r_dihedral_angle_4_deg17.181
r_dihedral_angle_3_deg13.986
r_dihedral_angle_1_deg5.516
r_sphericity_free3.909
r_scangle_it2.388
r_sphericity_bonded2.249
r_scbond_it1.602
r_angle_refined_deg1.233
r_mcangle_it1.192
r_rigid_bond_restr0.986
r_mcbond_it0.795
r_nbtor_refined0.298
r_nbd_refined0.194
r_symmetry_vdw_refined0.191
r_symmetry_hbond_refined0.13
r_xyhbond_nbd_refined0.113
r_chiral_restr0.08
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10994
Nucleic Acid Atoms
Solvent Atoms688
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
MOLREPphasing