2I7G

Crystal Structure of Monooxygenase from Agrobacterium tumefaciens


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52950.1M Bis-tris pH 5.5, 0.2M Ammonium sulfate, 25% PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.2645.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.515α = 90
b = 139.974β = 90
c = 54.049γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-3mirrors2006-08-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97908APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7329.3798.40.0868.310.87862178621
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.731.7987.50.50324.86883

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.7329.377041770417788198.350.172920.172920.16960.20199RANDOM30.563
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.36-0.61.96
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.143
r_dihedral_angle_4_deg17.721
r_dihedral_angle_3_deg16.148
r_dihedral_angle_1_deg5.726
r_scangle_it3.659
r_scbond_it2.41
r_mcangle_it1.412
r_angle_refined_deg1.405
r_mcbond_it0.928
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.143
r_dihedral_angle_4_deg17.721
r_dihedral_angle_3_deg16.148
r_dihedral_angle_1_deg5.726
r_scangle_it3.659
r_scbond_it2.41
r_mcangle_it1.412
r_angle_refined_deg1.405
r_mcbond_it0.928
r_nbtor_refined0.306
r_symmetry_hbond_refined0.259
r_symmetry_vdw_refined0.223
r_nbd_refined0.22
r_xyhbond_nbd_refined0.208
r_chiral_restr0.107
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5344
Nucleic Acid Atoms
Solvent Atoms660
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXDphasing
SHELXEmodel building
MLPHAREphasing
DMphasing
SOLVEphasing
RESOLVEphasing
CCP4phasing
ARP/wARPmodel building
Omodel building
Cootmodel building