☰ Navigation Tabs
Crystal structure of OspA mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C PDB ENTRY 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 30% PEG400
0.1M Tris-HCl, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.25 45.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.261 α = 90 b = 54.705 β = 99.91 c = 66.509 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.9795 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 50 97.8 0.053 0.053 19.25 3.3 93127
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.4 86.2 0.318 0.318 2.88 2.3 8153
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2G8C 1.1 20 88420 88420 4669 97.8 0.15553 0.15553 0.15471 0.163 0.17149 0.1785 RANDOM 9.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.02 0.43 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.329 r_dihedral_angle_3_deg 10.524 r_dihedral_angle_4_deg 8.389 r_dihedral_angle_1_deg 5.716 r_sphericity_free 4.133 r_scangle_it 3.09 r_scbond_it 2.27 r_sphericity_bonded 1.897 r_mcangle_it 1.55 r_mcbond_it 1.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.329 r_dihedral_angle_3_deg 10.524 r_dihedral_angle_4_deg 8.389 r_dihedral_angle_1_deg 5.716 r_sphericity_free 4.133 r_scangle_it 3.09 r_scbond_it 2.27 r_sphericity_bonded 1.897 r_mcangle_it 1.55 r_mcbond_it 1.282 r_angle_refined_deg 1.281 r_rigid_bond_restr 1.026 r_angle_other_deg 0.701 r_mcbond_other 0.348 r_nbd_refined 0.199 r_nbd_other 0.18 r_nbtor_refined 0.154 r_symmetry_vdw_other 0.136 r_xyhbond_nbd_refined 0.096 r_symmetry_vdw_refined 0.087 r_nbtor_other 0.083 r_chiral_restr 0.076 r_symmetry_hbond_refined 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1877 Nucleic Acid Atoms Solvent Atoms 378 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing