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Crystal structure of the C-terminal PH domain of pleckstrin in complex with D-myo-Ins(1,2,3,4,5)P5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 297.15 0.1M Bis-Tris pH 6.5, 28% PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, temperature 297.15K
Crystal Properties Matthews coefficient Solvent content 2.2 44.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.501 α = 90 b = 47.604 β = 90 c = 87.622 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 channel-cut Si(111) 2006-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C 0.9797 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 96.5 0.039 26.6 3.5 43292 39679 3 3 29.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.65 1.71 81.5 0.36 2.37 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 30 31402 31402 2609 98.47 0.17952 0.17952 0.17583 0.2635 0.24334 0.2826 RANDOM 40.133
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.12 0.13 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.368 r_dihedral_angle_3_deg 15.32 r_dihedral_angle_1_deg 13.82 r_sphericity_free 12.713 r_dihedral_angle_4_deg 10.172 r_scangle_it 6.055 r_sphericity_bonded 5.202 r_scbond_it 4.518 r_mcangle_it 3.189 r_rigid_bond_restr 3.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.368 r_dihedral_angle_3_deg 15.32 r_dihedral_angle_1_deg 13.82 r_sphericity_free 12.713 r_dihedral_angle_4_deg 10.172 r_scangle_it 6.055 r_sphericity_bonded 5.202 r_scbond_it 4.518 r_mcangle_it 3.189 r_rigid_bond_restr 3.127 r_mcbond_it 2.594 r_angle_refined_deg 2.233 r_nbtor_refined 0.323 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.238 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.157 r_symmetry_hbond_refined 0.15 r_bond_refined_d 0.024 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2362 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement CBASS data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing