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Abl kinase domain unligated and in complex with tetrahydrostaurosporine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 12 % PEG 8000, 0.1 M HEPES pH 7.5, 0.2 M MgAcetate, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.61 52.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 185.447 α = 90 b = 58.853 β = 119.02 c = 103.977 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2003-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9778 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 40 96.2 0.087 7.4 23576
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 83.3 0.335 2021
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 40 23575 1203 96.24 0.22 0.216 0.2129 0.285 0.279 RANDOM 63.614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -1.3 6 -5.84
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES, PERIOD 2 (DEGREES) 39.831 r_dihedral_angle_4_deg 19.175 r_dihedral_angle_3_deg 18.05 r_dihedral_angle_1_deg 8.781 r_scangle_it 2.264 r_angle_refined_deg 1.869 r_scbond_it 1.368 r_angle_other_deg 1.315 r_mcangle_it 1.1 r_mcbond_it 0.765
RMS Deviations Key Refinement Restraint Deviation TORSION ANGLES, PERIOD 2 (DEGREES) 39.831 r_dihedral_angle_4_deg 19.175 r_dihedral_angle_3_deg 18.05 r_dihedral_angle_1_deg 8.781 r_scangle_it 2.264 r_angle_refined_deg 1.869 r_scbond_it 1.368 r_angle_other_deg 1.315 r_mcangle_it 1.1 r_mcbond_it 0.765 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.159 r_symmetry_vdw_other 0.142 r_symmetry_vdw_refined 0.141 r_xyhbond_nbd_refined 0.137 r_nbd_other 0.13 r_mcbond_other 0.122 r_chiral_restr 0.102 r_nbtor_other 0.077 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6394 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 105
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction