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Crystal structure of the HePTP catalytic domain C270S mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 277 Sodium/Potassium phosphate, acetate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.96 68.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.106 α = 90 b = 127.106 β = 90 c = 59.999 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.97929 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.1 21649 21632 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 98.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 20 20680 20499 1105 99.12 0.212 0.18924 0.18721 0.1824 0.22769 0.2211 RANDOM 35.285
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.1 -0.2 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.718 r_dihedral_angle_4_deg 13.946 r_dihedral_angle_3_deg 13.198 r_dihedral_angle_1_deg 6.365 r_scangle_it 4.258 r_scbond_it 2.936 r_mcangle_it 2.013 r_mcbond_it 1.584 r_angle_refined_deg 1.31 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.718 r_dihedral_angle_4_deg 13.946 r_dihedral_angle_3_deg 13.198 r_dihedral_angle_1_deg 6.365 r_scangle_it 4.258 r_scbond_it 2.936 r_mcangle_it 2.013 r_mcbond_it 1.584 r_angle_refined_deg 1.31 r_nbtor_refined 0.3 r_nbd_refined 0.187 r_symmetry_vdw_refined 0.155 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.088 r_symmetry_hbond_refined 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2247 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing