2HO2

Structure of human FE65-WW domain in complex with hMena peptide.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.42931.85M Ammonium Sulfate, 0.1M HEPES, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8633.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.661α = 90
b = 41.661β = 90
c = 38.633γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 4DUAL SLITS2006-06-18MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X12B0.9792, 0.9793, 0.96NSLSX12B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.335098.60.05723.56.592589129
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.331.3890.30.4385.4815

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.3317.039129908543199.410.1740.1740.1720.214RANDOM16.478
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.08-0.04-0.080.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.45
r_dihedral_angle_4_deg14.444
r_dihedral_angle_3_deg13.228
r_sphericity_free11.263
r_sphericity_bonded6.036
r_dihedral_angle_1_deg5.754
r_scangle_it3.877
r_scbond_it3.514
r_mcangle_it3.083
r_mcbond_it2.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.45
r_dihedral_angle_4_deg14.444
r_dihedral_angle_3_deg13.228
r_sphericity_free11.263
r_sphericity_bonded6.036
r_dihedral_angle_1_deg5.754
r_scangle_it3.877
r_scbond_it3.514
r_mcangle_it3.083
r_mcbond_it2.57
r_angle_refined_deg1.958
r_rigid_bond_restr1.784
r_angle_other_deg1.093
r_mcbond_other1.074
r_symmetry_vdw_other0.252
r_nbd_refined0.24
r_xyhbond_nbd_refined0.235
r_nbd_other0.202
r_nbtor_refined0.201
r_symmetry_vdw_refined0.198
r_symmetry_hbond_refined0.155
r_chiral_restr0.113
r_nbtor_other0.096
r_bond_refined_d0.021
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms339
Nucleic Acid Atoms
Solvent Atoms34
Heterogen Atoms6

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing