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Crystal structure of the periplasmic domain of CcmH from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 294 20% PEG 1000, 0.1M Tris-HCl , pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K 2 VAPOR DIFFUSION, HANGING DROP 8 294 38% PEG 6000, 0.8M NaCl, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.073 α = 90 b = 45.414 β = 90 c = 48.127 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-02-15 M MAD 2 1 x-ray 100 CCD MAR CCD 165 mm 2005-07-15 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97920, 0.97940, 0.97560 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID14-4 0.93100 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 33 97.7 10212 10212 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.7 1.76 96.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD, MOLECULAR REPLACEMENT THROUGHOUT 1.7 30 10116 9417 478 97.82 0.21065 0.21065 0.20941 0.2236 0.23493 0.2436 RANDOM 32.849
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -1.21 1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.002 r_dihedral_angle_4_deg 16.972 r_dihedral_angle_3_deg 15.122 r_dihedral_angle_1_deg 5.276 r_scangle_it 3.354 r_scbond_it 2.311 r_mcangle_it 1.621 r_angle_refined_deg 1.358 r_mcbond_it 1.016 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.002 r_dihedral_angle_4_deg 16.972 r_dihedral_angle_3_deg 15.122 r_dihedral_angle_1_deg 5.276 r_scangle_it 3.354 r_scbond_it 2.311 r_mcangle_it 1.621 r_angle_refined_deg 1.358 r_mcbond_it 1.016 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.247 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.209 r_symmetry_hbond_refined 0.104 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 653 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing