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Structure of the ketosynthase-acyltransferase didomain of module 5 from DEBS.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 30% PEG4000, 0.2M Lithium Sulfate, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.37 63.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 305.258 α = 90 b = 150.149 β = 110.03 c = 184.378 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-05-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9392, 0.9793, 0.9789 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.73 48.17 99.8 0.112 8.3 3.8 206652 206652 57.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.73 2.88 99.9 0.68 1.9 3.8 30114
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.73 48.03 206602 196207 10395 99.75 0.2181 0.2181 0.21612 0.2225 0.255 0.2604 RANDOM 66.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -4.51 0.62 -3.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.495 r_dihedral_angle_3_deg 20.575 r_dihedral_angle_4_deg 17.088 r_dihedral_angle_1_deg 7.147 r_scangle_it 1.619 r_angle_refined_deg 1.458 r_scbond_it 0.97 r_angle_other_deg 0.829 r_mcangle_it 0.772 r_mcbond_it 0.606
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.495 r_dihedral_angle_3_deg 20.575 r_dihedral_angle_4_deg 17.088 r_dihedral_angle_1_deg 7.147 r_scangle_it 1.619 r_angle_refined_deg 1.458 r_scbond_it 0.97 r_angle_other_deg 0.829 r_mcangle_it 0.772 r_mcbond_it 0.606 r_nbd_refined 0.232 r_symmetry_vdw_other 0.213 r_nbtor_refined 0.185 r_symmetry_vdw_refined 0.183 r_nbd_other 0.182 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.154 r_mcbond_other 0.093 r_nbtor_other 0.089 r_chiral_restr 0.078 r_xyhbond_nbd_other 0.076 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 39038 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELX phasing RESOLVE phasing