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Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.75 298 15% PEG 5000, 0.2M MgCl2, pH 8.75, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.37 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.569 α = 90 b = 91.569 β = 90 c = 167.91 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-08-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.4 0.062 13.1 7.8 25447 4 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 0.446 8.1 2505
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 50 4 25404 1293 99.42 0.191 0.189 0.1886 0.238 0.2552 RANDOM 69.077
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 1.07 -2.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.784 r_dihedral_angle_4_deg 18.019 r_dihedral_angle_3_deg 16.923 r_dihedral_angle_1_deg 6.22 r_scangle_it 2.544 r_scbond_it 1.647 r_angle_refined_deg 1.345 r_mcangle_it 1.024 r_mcbond_it 0.609 r_symmetry_hbond_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.784 r_dihedral_angle_4_deg 18.019 r_dihedral_angle_3_deg 16.923 r_dihedral_angle_1_deg 6.22 r_scangle_it 2.544 r_scbond_it 1.647 r_angle_refined_deg 1.345 r_mcangle_it 1.024 r_mcbond_it 0.609 r_symmetry_hbond_refined 0.315 r_nbtor_refined 0.308 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.185 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5190 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection