2H8A

Structure of Microsomal Glutathione Transferase 1 in Complex with Glutathione


ELECTRON CRYSTALLOGRAPHY

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.8α = 90
b = 81.8β = 90
c = 100γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11electron MSINGLE WAVELENGTH

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
ELECTRON CRYSTALLOGRAPHYTHROUGHOUT3.210440945779.250.342370.338940.37628RANDOM26.662
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.58-1.29-2.583.88
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.936
r_dihedral_angle_3_deg26.23
r_dihedral_angle_4_deg16.716
r_dihedral_angle_1_deg9.855
r_angle_refined_deg1.863
r_scangle_it1.666
r_scbond_it1.131
r_mcangle_it0.981
r_mcbond_it0.529
r_symmetry_vdw_refined0.414
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.936
r_dihedral_angle_3_deg26.23
r_dihedral_angle_4_deg16.716
r_dihedral_angle_1_deg9.855
r_angle_refined_deg1.863
r_scangle_it1.666
r_scbond_it1.131
r_mcangle_it0.981
r_mcbond_it0.529
r_symmetry_vdw_refined0.414
r_symmetry_hbond_refined0.375
r_nbd_refined0.363
r_nbtor_refined0.336
r_xyhbond_nbd_refined0.267
r_chiral_restr0.12
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms964
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
Sample
Microsomal Glutathione Transferase 1 in Complex with Glutathione
Specimen Preparation
Sample Aggregation State2D ARRAY
3D Reconstruction
Reconstruction MethodCRYSTALLOGRAPHY
Number of Particles
Reported Resolution (Å)3.2
Resolution Method
Other Details
Refinement Type
Symmetry Type2D CRYSTAL
Data Acquisition
Detector Type
Electron Dose (electrons/Å**2)10
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)4
Microscope ModelJEOL 3000SFF
Minimum Defocus (nm)300
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)62.6
Nominal CS1.6
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification60000
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging DetailsElectron diffraction at 1.2 m camera length
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
Crystallographic