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Crystal structure of the JUN BZIP homodimer complexed with AP-1 DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 15% PEG 400, 50 mM HEPES, 160 mM AmFormate, 30 mM MgAcetate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.18 61.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.258 α = 90 b = 74.203 β = 111.25 c = 58.303 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2005-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97951 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 50 92 0.056 12.2 3.9 14887
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.24 2.32 65.7 0.3 3.65 2.9 1042
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 30 14887 12698 1430 94.1 0.22398 0.21849 0.2182 0.27427 0.2749 RANDOM 37.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.41 -0.19 -3.66 -0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.563 r_dihedral_angle_3_deg 23.409 r_dihedral_angle_4_deg 19.647 r_scangle_it 6.705 r_dihedral_angle_1_deg 5.325 r_scbond_it 5.066 r_mcangle_it 3.505 r_mcbond_it 2.67 r_angle_refined_deg 1.558 r_symmetry_vdw_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.563 r_dihedral_angle_3_deg 23.409 r_dihedral_angle_4_deg 19.647 r_scangle_it 6.705 r_dihedral_angle_1_deg 5.325 r_scbond_it 5.066 r_mcangle_it 3.505 r_mcbond_it 2.67 r_angle_refined_deg 1.558 r_symmetry_vdw_refined 0.327 r_nbtor_refined 0.31 r_symmetry_hbond_refined 0.266 r_xyhbond_nbd_refined 0.232 r_nbd_refined 0.218 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 950 Nucleic Acid Atoms 773 Solvent Atoms 49 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data scaling CNS phasing