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Spectroscopic and structural study of the heterotropic linkage between halide and proton ion binding to GFP proteins- E2(GFP) APO FORM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 14% (w/v) PEG3350, 100 mM NH4 acetate pH 5.0, 0.2 M NH4F, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 100K
Crystal Properties Matthews coefficient Solvent content 2.03 39.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.133 α = 90 b = 62.85 β = 90 c = 69.631 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 46.7 75 0.072 0.072 5.6 7 38294 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.47 1.54 95 0.156 0.156 4.1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.47 46.62 2 36275 1926 97.32 0.16017 0.15882 0.1678 0.18692 0.1927 RANDOM 8.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.23 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.036 r_dihedral_angle_4_deg 17.01 r_dihedral_angle_3_deg 12.082 r_dihedral_angle_1_deg 6.401 r_scangle_it 2.629 r_scbond_it 1.686 r_angle_refined_deg 1.35 r_angle_other_deg 1.282 r_mcangle_it 1.017 r_mcbond_it 0.506
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.036 r_dihedral_angle_4_deg 17.01 r_dihedral_angle_3_deg 12.082 r_dihedral_angle_1_deg 6.401 r_scangle_it 2.629 r_scbond_it 1.686 r_angle_refined_deg 1.35 r_angle_other_deg 1.282 r_mcangle_it 1.017 r_mcbond_it 0.506 r_nbd_refined 0.273 r_metal_ion_refined 0.268 r_symmetry_vdw_other 0.197 r_nbd_other 0.195 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.113 r_mcbond_other 0.107 r_symmetry_hbond_refined 0.106 r_symmetry_vdw_refined 0.094 r_nbtor_other 0.084 r_chiral_restr 0.072 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1881 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction MOLREP phasing