2H6B

Crystal structure of oxidized CprK in complex with o-chlorophenolacetic acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52771.8 M Ammonium sulphate, 1mM orthochlorophenol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.0860.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.437α = 90
b = 112.185β = 90
c = 119.495γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2004-03-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.9EMBL/DESY, HamburgX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.22099.20.10216.63551240
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.251000.5732.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT2.219.92333503335017601000.185790.185790.183460.22945RANDOM39.915
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.04-0.090.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.235
r_dihedral_angle_3_deg18.358
r_dihedral_angle_4_deg16.584
r_dihedral_angle_1_deg6.429
r_scangle_it4.039
r_scbond_it2.699
r_angle_refined_deg1.989
r_mcangle_it1.805
r_mcbond_it1.24
r_angle_other_deg0.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.235
r_dihedral_angle_3_deg18.358
r_dihedral_angle_4_deg16.584
r_dihedral_angle_1_deg6.429
r_scangle_it4.039
r_scbond_it2.699
r_angle_refined_deg1.989
r_mcangle_it1.805
r_mcbond_it1.24
r_angle_other_deg0.97
r_mcbond_other0.275
r_symmetry_vdw_other0.261
r_nbd_refined0.217
r_nbd_other0.196
r_symmetry_vdw_refined0.195
r_nbtor_refined0.186
r_xyhbond_nbd_refined0.159
r_chiral_restr0.112
r_xyhbond_nbd_other0.097
r_nbtor_other0.093
r_symmetry_hbond_refined0.072
r_bond_refined_d0.024
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3772
Nucleic Acid Atoms
Solvent Atoms228
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing