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Denmotoxin: A the three-finger toxin from colubrid snake Boiga dendrophila with bird-specific activity
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.9 291 1.2M Na, KPO4, pH 7.9, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.35 47.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.91 α = 90 b = 34.038 β = 118.36 c = 54.377 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.006768 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 52 93.5 50240
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.74 72.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 47.67 12080 11487 584 94.19 0.20373 0.20188 0.2089 0.2384 0.2325 RANDOM 15.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.31 0.43 -0.4 -0.5
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.098 r_dihedral_angle_1_deg 5.561 r_scbond_it 4.235 r_mcangle_it 3.727 r_angle_refined_deg 2.088 r_mcbond_it 2.079 r_angle_other_deg 1.036 r_nbd_refined 0.363 r_symmetry_vdw_other 0.329 r_nbd_other 0.311
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.098 r_dihedral_angle_1_deg 5.561 r_scbond_it 4.235 r_mcangle_it 3.727 r_angle_refined_deg 2.088 r_mcbond_it 2.079 r_angle_other_deg 1.036 r_nbd_refined 0.363 r_symmetry_vdw_other 0.329 r_nbd_other 0.311 r_symmetry_vdw_refined 0.299 r_symmetry_hbond_refined 0.263 r_xyhbond_nbd_refined 0.231 r_chiral_restr 0.148 r_nbtor_other 0.095 r_metal_ion_refined 0.071 r_bond_refined_d 0.032 r_bond_other_d 0.021 r_gen_planes_refined 0.011 r_gen_planes_other 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1135 Nucleic Acid Atoms Solvent Atoms 284 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data scaling MOLREP phasing