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Crystal Structure of Rab11 in Complex with Rab11-Family Interacting Protein 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 Ammonium phosphate buffer, approximately 0.3M concentration, pH 5, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.24 45.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.74 α = 90 b = 64.74 β = 90 c = 112.4 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm 2005-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.98175 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.47 50 99.8 0.067 16.3 16 10254 10234 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.47 2.56 98.6 0.297 15.9 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.47 30 10234 9719 492 99.88 0.19914 0.19655 0.2087 0.25353 0.2674 RANDOM 47.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.07 0.15 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.526 r_dihedral_angle_4_deg 21.656 r_dihedral_angle_3_deg 18.903 r_dihedral_angle_1_deg 7.096 r_scangle_it 4.631 r_scbond_it 2.83 r_mcangle_it 2.146 r_angle_refined_deg 1.977 r_mcbond_it 1.213 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.526 r_dihedral_angle_4_deg 21.656 r_dihedral_angle_3_deg 18.903 r_dihedral_angle_1_deg 7.096 r_scangle_it 4.631 r_scbond_it 2.83 r_mcangle_it 2.146 r_angle_refined_deg 1.977 r_mcbond_it 1.213 r_nbtor_refined 0.317 r_nbd_refined 0.256 r_symmetry_vdw_refined 0.224 r_symmetry_hbond_refined 0.192 r_xyhbond_nbd_refined 0.181 r_chiral_restr 0.117 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1809 Nucleic Acid Atoms Solvent Atoms 125 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data scaling PHASER phasing