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Discovery of 2-Pyrimidyl-5-Amidothiophenes as Novel and Potent Inhibitors for AKT: Synthesis and SAR Studies
Crystallization Crystal Properties Matthews coefficient Solvent content 2.62 53.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.72 α = 90 b = 75.165 β = 90 c = 79.844 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2004-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 79.81 98.7 0.053 3.7 22827 37.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 93.1 0.358 0.358 3.1 2.7 3013
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 36.37 22827 21339 1160 98.56 0.2032 0.20591 0.20279 0.26118 0.2454 RANDOM 49.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.972 r_dihedral_angle_4_deg 18.98 r_dihedral_angle_3_deg 17.38 r_dihedral_angle_1_deg 6.828 r_scangle_it 4.174 r_scbond_it 2.911 r_mcangle_it 1.788 r_angle_refined_deg 1.748 r_mcbond_it 1.164 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.972 r_dihedral_angle_4_deg 18.98 r_dihedral_angle_3_deg 17.38 r_dihedral_angle_1_deg 6.828 r_scangle_it 4.174 r_scbond_it 2.911 r_mcangle_it 1.788 r_angle_refined_deg 1.748 r_mcbond_it 1.164 r_nbtor_refined 0.317 r_symmetry_hbond_refined 0.283 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.132 r_symmetry_vdw_refined 0.131 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2925 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement