☰ Navigation Tabs
Estrogen Related Receptor-gamma ligand binding domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ERT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.1m Tris pH8.0
15mM CaCl2
30% PEG600
2% PEG35K, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.5 50.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.388 α = 90 b = 80.369 β = 90 c = 211.22 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 50 84.3 0.086 32729
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.54 36.8 0.737
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3ERT 2.45 48.22 38693 32672 1019 84.44 0.209 0.209 0.207 0.263 0.2212 RANDOM 39.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.2 2.62 -1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.585 r_dihedral_angle_4_deg 17.02 r_dihedral_angle_3_deg 16.824 r_dihedral_angle_1_deg 4.351 r_scangle_it 1.508 r_angle_refined_deg 1.158 r_scbond_it 0.942 r_mcangle_it 0.864 r_angle_other_deg 0.781 r_mcbond_it 0.528
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.585 r_dihedral_angle_4_deg 17.02 r_dihedral_angle_3_deg 16.824 r_dihedral_angle_1_deg 4.351 r_scangle_it 1.508 r_angle_refined_deg 1.158 r_scbond_it 0.942 r_mcangle_it 0.864 r_angle_other_deg 0.781 r_mcbond_it 0.528 r_symmetry_vdw_refined 0.245 r_symmetry_vdw_other 0.211 r_nbd_refined 0.208 r_metal_ion_refined 0.201 r_symmetry_hbond_refined 0.2 r_nbtor_refined 0.173 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.171 r_mcbond_other 0.106 r_nbtor_other 0.089 r_chiral_restr 0.063 r_symmetry_metal_ion_refined 0.031 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7086 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 1
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection AMoRE phasing