2GLN

Crystal structure of Mycobacterium tuberculosis trHbN, GlnE11Ala mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7277sodium dihydrogen phosphate and dipotassium hydrogen phosphate 1.8 M, pH 7.0, VAPOR DIFFUSION, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.1141.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.777α = 90
b = 60.443β = 90
c = 87.886γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7A0.931EMBL/DESY, HAMBURGBW7A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.985098.81647116471
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.982.0387.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9850164711647187998.790.176340.176340.17330.23345RANDOM26.227
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.561.87-1.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.442
r_dihedral_angle_4_deg15.306
r_dihedral_angle_3_deg13.237
r_scangle_it5.723
r_dihedral_angle_1_deg5.046
r_scbond_it4.371
r_mcangle_it2.819
r_mcbond_it1.805
r_angle_refined_deg1.217
r_nbtor_refined0.297
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.442
r_dihedral_angle_4_deg15.306
r_dihedral_angle_3_deg13.237
r_scangle_it5.723
r_dihedral_angle_1_deg5.046
r_scbond_it4.371
r_mcangle_it2.819
r_mcbond_it1.805
r_angle_refined_deg1.217
r_nbtor_refined0.297
r_nbd_refined0.21
r_symmetry_vdw_refined0.179
r_symmetry_hbond_refined0.141
r_xyhbond_nbd_refined0.117
r_chiral_restr0.083
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1950
Nucleic Acid Atoms
Solvent Atoms191
Heterogen Atoms101

Software

Software
Software NamePurpose
MOSFLMdata reduction
EPMRphasing
REFMACrefinement