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Crystal Structure of a vesicular stomatitis virus nucleocapsid-RNA complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 7 % PEG 3350, 250 mM sodium chloride, 100mM sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.96 58.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.16 α = 90 b = 236.316 β = 90 c = 75.651 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2004-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.99997 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.92 44.86 96.96 64651 59391
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.92 3.02 91.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.92 44.86 59391 59391 3007 91.86 0.258 0.258 0.255 0.2699 0.306 0.3234 RANDOM 28.477
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.07 -0.09 -7.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.854 r_dihedral_angle_3_deg 19.856 r_dihedral_angle_4_deg 17.078 r_dihedral_angle_1_deg 5.165 r_angle_refined_deg 1.153 r_scangle_it 0.958 r_scbond_it 0.547 r_mcangle_it 0.386 r_nbtor_refined 0.304 r_nbd_refined 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.854 r_dihedral_angle_3_deg 19.856 r_dihedral_angle_4_deg 17.078 r_dihedral_angle_1_deg 5.165 r_angle_refined_deg 1.153 r_scangle_it 0.958 r_scbond_it 0.547 r_mcangle_it 0.386 r_nbtor_refined 0.304 r_nbd_refined 0.21 r_mcbond_it 0.207 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.139 r_chiral_restr 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16517 Nucleic Acid Atoms 900 Solvent Atoms Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction