2GGC

Novel bacterial methionine aminopeptidase inhibitors

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	batch	7	298	10 mg/ml protein, 25% PEG 8000, 100 mM TRIS-HCl, 1-5 mM inhibitor, pH 7.0, batch, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
1.87	34.39

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 38.754	α = 90
b = 59.468	β = 111.64
c = 51.197	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 4		2002-01-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 17-ID	1.0	APS	17-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1	23.8	93.2	0.021	28.1	2.6	98330	98330

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1	1.15	73.2		0.082	11.2	1.5	17489

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2GG0	1	23.8	98330	98330	4955	84.55	0.12	0.12	0.12	0.133	RANDOM	8.287

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.09		-0.02	0.11		-0.21

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.742
r_dihedral_angle_4_deg	13.369
r_dihedral_angle_3_deg	12.713
r_dihedral_angle_1_deg	8.467
r_sphericity_free	6.205
r_scangle_it	3.567
r_sphericity_bonded	2.655
r_scbond_it	2.411
r_mcangle_it	1.928
r_angle_refined_deg	1.39
r_mcbond_it	1.238
r_rigid_bond_restr	1.026
r_angle_other_deg	0.718
r_mcbond_other	0.563
r_symmetry_hbond_refined	0.367
r_nbd_refined	0.343
r_symmetry_vdw_refined	0.318
r_symmetry_vdw_other	0.309
r_nbd_other	0.225
r_xyhbond_nbd_refined	0.218
r_metal_ion_refined	0.187
r_nbtor_refined	0.177
r_xyhbond_nbd_other	0.105
r_nbtor_other	0.088
r_chiral_restr	0.083
r_bond_refined_d	0.006
r_gen_planes_refined	0.005
r_gen_planes_other	0.003
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2311
Nucleic Acid Atoms
Solvent Atoms	345
Heterogen Atoms	12

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction