X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529818% PEG 400, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.1460.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.908α = 90
b = 81.724β = 90
c = 136.64γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC QUANTUM 42005-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-41.0202ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.870.298.20.07417.37829907930823.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.988.20.44835

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2GEX1.843.987877978779413398.060.175940.175940.174830.19712RANDOM25.409
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.060.18-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.819
r_dihedral_angle_4_deg15.497
r_dihedral_angle_3_deg13.305
r_dihedral_angle_1_deg5.254
r_scangle_it2.46
r_scbond_it1.57
r_angle_refined_deg1.096
r_mcangle_it0.745
r_angle_other_deg0.711
r_mcbond_it0.686
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.819
r_dihedral_angle_4_deg15.497
r_dihedral_angle_3_deg13.305
r_dihedral_angle_1_deg5.254
r_scangle_it2.46
r_scbond_it1.57
r_angle_refined_deg1.096
r_mcangle_it0.745
r_angle_other_deg0.711
r_mcbond_it0.686
r_nbd_refined0.197
r_symmetry_vdw_other0.197
r_symmetry_vdw_refined0.175
r_nbd_other0.172
r_nbtor_refined0.167
r_symmetry_hbond_refined0.137
r_xyhbond_nbd_refined0.112
r_mcbond_other0.112
r_nbtor_other0.082
r_chiral_restr0.063
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4558
Nucleic Acid Atoms
Solvent Atoms548
Heterogen Atoms89

Software

Software
Software NamePurpose
REFMACrefinement