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Crystal structure of Dioclea violacea seed lectin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 10% PEG 8000, 10% PEG 1000, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.42 49.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.938 α = 90 b = 72.938 β = 90 c = 161.362 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARRESEARCH 2004-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.97944 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 49 100 37630 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.53 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 45 1 35691 1879 99.93 0.22829 0.22823 0.22667 0.2255 0.25785 0.2587 RANDOM 36.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.14 -0.27 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.831 r_dihedral_angle_4_deg 21.172 r_dihedral_angle_3_deg 20.179 r_dihedral_angle_1_deg 8.44 r_scangle_it 2.54 r_angle_refined_deg 1.651 r_scbond_it 1.578 r_mcangle_it 1.248 r_mcbond_it 0.683 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.831 r_dihedral_angle_4_deg 21.172 r_dihedral_angle_3_deg 20.179 r_dihedral_angle_1_deg 8.44 r_scangle_it 2.54 r_angle_refined_deg 1.651 r_scbond_it 1.578 r_mcangle_it 1.248 r_mcbond_it 0.683 r_nbtor_refined 0.307 r_nbd_refined 0.239 r_xyhbond_nbd_refined 0.213 r_symmetry_vdw_refined 0.145 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.111 r_metal_ion_refined 0.109 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7080 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing