X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.3363.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 186.019α = 90
b = 186.019β = 90
c = 94.641γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.552597.70.0751131295
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.552.5987.40.58

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.55160.1331259158597.790.2030.2030.1990.261RANDOM43.13
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.130.561.13-1.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.478
r_dihedral_angle_4_deg22.756
r_dihedral_angle_3_deg22.049
r_dihedral_angle_1_deg8.35
r_scangle_it5.479
r_scbond_it3.515
r_mcangle_it2.967
r_angle_refined_deg2.858
r_mcbond_it1.809
r_nbtor_refined0.344
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.478
r_dihedral_angle_4_deg22.756
r_dihedral_angle_3_deg22.049
r_dihedral_angle_1_deg8.35
r_scangle_it5.479
r_scbond_it3.515
r_mcangle_it2.967
r_angle_refined_deg2.858
r_mcbond_it1.809
r_nbtor_refined0.344
r_nbd_refined0.282
r_symmetry_vdw_refined0.262
r_xyhbond_nbd_refined0.186
r_chiral_restr0.18
r_symmetry_hbond_refined0.165
r_bond_refined_d0.033
r_gen_planes_refined0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4980
Nucleic Acid Atoms
Solvent Atoms277
Heterogen Atoms70

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction