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Zinc-beta-lactamase L1 from stenotrophomonas maltophilia (d-captopril complex)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SML PDB ENTRY 1SML
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 280 AS, pH 7.50, VAPOR DIFFUSION, HANGING DROP, temperature 280K
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.011 α = 90 b = 105.011 β = 90 c = 196.615 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2005-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 21.24 90.9 0.114 0.114 5.3 2.9 56045 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 90.9 0.416 0.416 1.8 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SML 1.8 21.2 2 51428 2717 90.34 0.16093 0.1598 0.1712 0.18252 0.1727 RANDOM 14.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.17 0.33 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.716 r_scangle_it 3.746 r_scbond_it 2.309 r_mcangle_it 1.454 r_angle_refined_deg 1.386 r_angle_other_deg 0.815 r_mcbond_it 0.797 r_nbd_refined 0.344 r_symmetry_vdw_other 0.312 r_nbd_other 0.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.716 r_scangle_it 3.746 r_scbond_it 2.309 r_mcangle_it 1.454 r_angle_refined_deg 1.386 r_angle_other_deg 0.815 r_mcbond_it 0.797 r_nbd_refined 0.344 r_symmetry_vdw_other 0.312 r_nbd_other 0.259 r_symmetry_vdw_refined 0.195 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.083 r_nbtor_other 0.083 r_metal_ion_refined 0.068 r_bond_refined_d 0.013 r_bond_other_d 0.009 r_gen_planes_refined 0.006 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4002 Nucleic Acid Atoms Solvent Atoms 686 Heterogen Atoms 78
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling CCP4 model building REFMAC refinement CCP4 data scaling CCP4 phasing